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現在位置: ホーム 前田グループ 研究業績

研究業績

構造生物学研究センター発足後(2007年以降)の業績リスト

Publications:

  1. Oda T, Stegmann H, Schröder R, Namba K, Yuichiro Maéda, ”Modeling of the F-Actin Structure” Adv Exp Med Biol. 592:385-401.(in Regulatory Mechanisms of Striated Muscle Contraction, ed Setsuro Ebashi & Iwao Ohtsuki, Springer Verlag) (2007) (invited paper).
  2. Nitanai Y, Maeda K, Oda N, Minakata S, Yuichiro Maéda, “Crystal structures of tropomyosin: flexible coiled-coil”, Adv Exp Med Biol. 592:137-151 (in Regulatory Mechanisms of Striated Muscle Contraction, ed Setsuro Ebashi & Iwao Ohtsuki, Springer Verlag) (2007) (invited paper).
  3. Yuichiro Maéda, Yasushi Nitanai, Toshiro Oda, “From the crystal structure of troponin to the mechanism of calcium regulation of muscle contraction” Adv Exp Med Biol. 592: 37-46 (in Regulatory Mechanisms of Striated Muscle Contraction, ed Setsuro Ebashi & Iwao Ohtsuki, Springer Verlag) (2007) (invited paper).
  4. Akihiro Narita & Yuichiro Maéda, “Molecular determination by electron microscopy of the actin filament end structure”, J.Mol.Biol. 365:480-501 (2007).
  5. Popp D, Yamamoto A, Iwasa M, Narita A, Maeda K, Yuichiro Maéda, “Concerning the dynamic instability of actin homolog ParM” Biochem Biophys Res Commun. 353:109-114 (2007).
  6. Popp D, Yamamoto A and Yuichiro Maéda, “Crowded surfaces change annealing dynamics of actin filaments”, J. Mol Biol. 368:365-74 (2007).
  7. Narita A, Mizuno N, Kikkawa M and Yuichiro Maéda, "Molecular Determination by Electron Microscopy of the Dynein-Microtubule Complex Structure" J. Mol. Biol., 372: 1320-1336 (2007).
  8. Hirayama T, Iyoshi S, Taki M, Yuichiro Maéda, Yamamoto Y, “Synthesis of a new bifunctionalised fluorescent label and physical properties of the bound form on model peptide of troponin C”, Org Biomol Chem. 5:2040-2045 (2007).
  9. David Popp, Akihiro Narita, Toshiro Oda, Tetsuro Fujisawa, Hiroshi Matsuo, Yasushi Nitanai, Matsusada Iwasa, Kayo Maeda, Hirofumi Onishi and Yuichiro Maéda, “Molecular Structure of the ParM Polymer and the Mechanism Leading to its Nucleotide Driven Dynamic Instability” EMBO J. 27:570-579 (2008)
  10. Hirayama T, Iyoshi S, Taki M, Yuichiro Maéda, Yamamoto Y, “Synthesis of a new bifunctionalised fluorescent label and physical properties of the bound form on model peptide of troponin C”, Org Biomol Chem. 5:2040-2045 (2007).
  11. Mizuno N, Narita A, Kon T, Sutoh K, Kikkawa M, “Three-dimensional structure of cytoplasmic dynein bound to microtubules”, Proc Natl Acad Sci U S A. (2007) 104:20832-20837.
  12. Narita A (2007) “Regulation mechanism of elongation at the actin filament ends”, Bionics 28:62-69 (バイオニクス in Japanese)
  13. Popp D, Yamamoto A, Iwasa M, Nitanai Y and Yuichiro Maéda, “Single molecular polymerization, annealing and bundling dynamics of SipA induced actin filaments", Cell Motility and the Cytoskeleton, 65:165-77 (2008)
  14. Akiyama S, Nohara A, Ito K, Yuichiro Maéda, Assembly and Disassembly Dynamics of the Cyanobacterial Periodosome. Mol. Cell 29:703-716. (2008)
  15. Minakata S, Maeda K, Oda N, Wakabayashi K, Nitanai Y, Yuichiro Maéda, “Two crystal structures of tropomyosin C-terminal fragment 176-273: exposure of the hydrophobic core to the solvent destabilizes the tropomyosin molecule.” Biophysical J. 95:710-719. (2008)
  16. David Popp, Nir S. Gov, Mitsusada Iwasa and Yuichiro Maéda, "Effect of short-range forces on the length distribution of fibrous cytoskeletal proteins". Biopolymers. (2008)
  17. Mitsusada Iwasa, Kayo Maeda, Akihiro Narita, Yuichiro Maéda and Toshiro Oda, “Dual Roles of Q137 of Actin Revealed by Recombinant Human Cardiac Muscle -Actin Mutants” J.Biol.Chem. 283:21045-53. (2008)
  18. Popp D, Iwasa M, Maeda K, Narita A, Oda T, Maeda Y (2009) “Protofilament formation of ParM mutants”, J.Mol.Biol. 388:209-217.
  19. Matsumoto F, Maeda K, Chatake T, Maéda Y, Fujiwara S (2009) “Functional aberration of myofibrils by cardiomyopathy-causing mutations in the coiled-coil region in the Troponin-core domain”, Biochem.Biophys.Res.Com. 382:205-209.
  20.  Popp D, Iwasa M, Narita N, Erickson HP & Maéda Y (2009) “FtsZ condensates: An in vitro electron microscopy study“, Biopolymers, 91(5):340-50.
  21. Oda T, Iwasa M, Aihara T, Maéda Y , Narita A (2009) “The nature of the G- to F-actin transition”, Nature, 457:441-446.
  22. Narita A (2009) "Single particle analysis for filamentous complexes", Biophys. (生物物理) 49(6), 314-317 (in Japanese)
  23. Popp, D., Narita, A., Iwasa, M., Maeda, Y. & Robinson, R. C. (2010). Molecular mechanism of bundle formation by the bacterial actin ParM. Biochem Biophys Res Commun 391, 1598-603
  24. Popp, D., Xu, W., Narita, A., Brzoska, A. J., Skurray, R. A., Firth, N., Goshdastider, U., Maeda, Y., Robinson, R. C. & Schumacher, M. (2010). Structure and filament dynamics of the pSK41 actin-like ParM protein: implications for plasmid DNA segregation. J Biol Chem.
  25. Popp, D., Narita, A., Iwasa, M., Maeda, Y. & Robinson, R. C. (2010). Molecular mechanism of bundle formation by the bacterial actin ParM. Biochem Biophys Res Commun 391, 1598-603.
    Popp, D., Iwasa, M., Erickson, H. P., Narita, A., Maeda, Y. & Robinson, R. C. (2010). Suprastructures and dynamic properties of mycobacterium tuberculosis FtsZ. J Biol Chem.
  26. Takeda, S., Minakata, S., Koike, R., Kawahata, I., Narita, A., Kitazawa, M., Ota, M., Yamakuni, T., Maeda, Y. & Nitanai, Y. Two distinct mechanisms for actin capping protein regulation--steric and allosteric inhibition. PLoS Biol 8, e1000416.
  27. Popp, D., Narita, A., Ghoshdastider, U., Maeda, K., Maeda, Y., Oda, T., Fujisawa, T., Onishi, H., Ito, K. & Robinson, R. C. (2010). Polymeric structures and dynamic properties of the bacterial actin AlfA. J Mol Biol 397, 1031-41.
  28. Popp, D., Narita, A., Maeda, K., Fujisawa, T., Ghoshdastider, U., Iwasa, M., Maeda, Y. & Robinson, R. C. (2010). Filament structure, organization, and dynamics in MreB sheets. J Biol Chem 285, 15858-65.
  29. Oda T, Maéda Y  (2010) “Multiple conformations of F-actin” Structure, 18:761-767.
  30. Ito, T., Hirayama, T., Taki, M., Iyoshi, S., Dai, S., Takeda, S., Kimura-Sakiyama, C., Oda, T., Yamamoto, Y., Maeda, Y. & Narita, A. (2011). Electron microscopic visualization of the filament binding mode of actin-binding proteins. J Mol Biol 408, 26-39.
  31. Ito, T., Narita, A., Hirayama, T., Taki, M., Iyoshi, S., Yamamoto, Y., Maeda, Y. & Oda, T. (2011). Human spire interacts with the barbed end of the actin filament. J Mol Biol 408, 18-25.
  32. Narita, A., Oda, T. & Maeda, Y. (2011). Structural basis for the slow dynamics of the actin filament pointed end. Embo J 30, 1230-7.
  33. Murayama, Y., Mukaiyama, A., Imai, K., Onoue, Y., Tsunoda, A., Nohara, A., Ishida, T., Maeda, Y., Terauchi, K., Kondo, T. & Akiyama, S. (2011). Tracking and visualizing the circadian ticking of the cyanobacterial clock protein KaiC in solution. EMBO J 30, 68-78.
  34. Takeda, S., Koike, R., Nitanai, Y., Minakata, S., Maeda, Y. & Ota, M. (2011). Actin capping protein and its inhibitor CARMIL: how intrinsically disordered regions function. Phys Biol 8, 035005.
  35. Narita, A. (2011). Merits of the double-stranded form of the actin filament revealed by structures of the filament ends. Communicative & Integrative Biology 4, 692-695
  36. Narita, A. (2011). Minimum requirements for the actin-like treadmilling motor system. BioArchitecture 1, 205-208
  37. Narita, A., Mueller, J., Urban, E., Vinzenz, M., Small, J. V. & Maeda, Y. (2012). Direct Determination of Actin Polarity in the Cell. J. Mol. Biol. 22 359-368
  38. Vinzenz, M., Nemethova, M., Schur, F., Mueller, J., Narita, A., Urban, E., Winkler, C., Schmeiser, C., Koestler, S. A., Rottner, K., Resch, G. P., Maeda, Y. & Small, J. V. (2012). Actin branching in the initiation and maintenance of lamellipodia. J Cell Sci.  J Cell Sci 125, 2775-85.
  39. *Popp, D., *Narita, A., Lee, L. J., Goshdastider, U., Xue, B., Srinivasan, R., Balasubramanian, M. K., Tanaka, T. & Robinson, R. C. (*: equally contributing authors) (2012). A novel actin-like filament structure from Clostridium tetani. J Biol Chem. 287, 21121-9.
  40. *Popp, D., *Narita, A., Lee, L. J., Larsson, M. & Robinson, R. C. (2012). (*: equally contributing authors) Microtubule-like Properties of the Bacterial Actin Homolog ParM-R1. J Biol Chem 287, 37078-88.
  41. Iwasa, M., Aihara, T., Maeda, K., Narita, A., Maeda, Y. & Oda, T. (2012). Role of the actin ala-108-pro-112 loop in actin polymerization and ATPase activities. J Biol Chem 287, 43270-6.
  42. Mueller, J, Pfanzelter, J, Winkler, C, Narita, A, Clainche, CL, Nemethova, M, Carlier, M, Maeda, Y, Welch, MD, Ohkawa, T, Schmeiser, C, Resch, GP, Small, JV (2014).   Electron Tomography and Simulation of Baculovirus Actin Comet Tails Support a Tethered Filament Model of Pathogen Propulsion, PLOS Biol., doi/10.1371/journal.pbio.1001765
  43. Hiroshi Imai, Akihiro Narita, Yuichiro Maéda, Trina A. Schroer (2014), Dynactin 3D Structure: Implications for Assembly and Dynein Binding, J. Mol. Biol. 426(19), 3262-3271




 

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